{ "cells": [ { "cell_type": "markdown", "id": "0fbcd606", "metadata": {}, "source": [ "# 1970 British Cohort Study (BCS70)" ] }, { "cell_type": "code", "execution_count": 1, "id": "4e22925a", "metadata": { "execution": { "iopub.execute_input": "2025-07-28T18:20:19.730590Z", "iopub.status.busy": "2025-07-28T18:20:19.730590Z", "iopub.status.idle": "2025-07-28T18:20:24.792817Z", "shell.execute_reply": "2025-07-28T18:20:24.790795Z" }, "tags": [ "remove-input" ] }, "outputs": [ { "data": { "text/markdown": [ ">Last modified: 28 Jul 2025" ], "text/plain": [ "<IPython.core.display.Markdown object>" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "\n", "import sys\n", "import os\n", "sys.path.append(os.path.abspath('../../scripts/'))\n", "from data_doc_helper import LPSSource as SS, last_modified\n", "ss = SS(\"BCS70\")\n", "last_modified()\n" ] }, { "cell_type": "markdown", "id": "91613d90", "metadata": {}, "source": [ "## 1. Summary" ] }, { "cell_type": "code", "execution_count": 2, "id": "9591a316", "metadata": { "execution": { "iopub.execute_input": "2025-07-28T18:20:24.802051Z", "iopub.status.busy": "2025-07-28T18:20:24.800051Z", "iopub.status.idle": "2025-07-28T18:20:24.813902Z", "shell.execute_reply": "2025-07-28T18:20:24.812890Z" }, "tags": [ "remove-input" ] }, "outputs": [ { "data": { "text/markdown": [ "The 1970 British Cohort Study (BCS70) is a multidisciplinary national longitudinal birth cohort study. Original aims were to examine the social and biological characteristics of the mother in relation to neonatal morbidity, and to compare the results with the 1958 National Child Development Study (NCDS). With each successive sweep, the scope of the enquiry has broadened from a strictly medical focus at birth, to encompass physical, educational, social and economic development. " ], "text/plain": [ "<IPython.core.display.Markdown object>" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "ss.summary()" ] }, { "cell_type": "code", "execution_count": 3, "id": "e12a3361", "metadata": { "execution": { "iopub.execute_input": "2025-07-28T18:20:24.818909Z", "iopub.status.busy": "2025-07-28T18:20:24.818909Z", "iopub.status.idle": "2025-07-28T18:20:26.236762Z", "shell.execute_reply": "2025-07-28T18:20:26.235743Z" }, "tags": [ "remove-input" ] }, "outputs": [ { "data": { "text/html": [ "<style type=\"text/css\">\n", "#T_25dd6 th {\n", " text-align: left;\n", "}\n", "#T_25dd6_row0_col0, #T_25dd6_row0_col1, #T_25dd6_row1_col0, #T_25dd6_row1_col1, #T_25dd6_row2_col0, #T_25dd6_row2_col1, #T_25dd6_row3_col0, #T_25dd6_row3_col1, #T_25dd6_row4_col0, #T_25dd6_row4_col1, #T_25dd6_row5_col0, #T_25dd6_row5_col1, #T_25dd6_row6_col0, #T_25dd6_row6_col1, #T_25dd6_row7_col0, #T_25dd6_row7_col1, #T_25dd6_row8_col0, #T_25dd6_row8_col1, #T_25dd6_row9_col0, #T_25dd6_row9_col1, #T_25dd6_row10_col0, #T_25dd6_row10_col1, #T_25dd6_row11_col0, #T_25dd6_row11_col1, #T_25dd6_row12_col0, #T_25dd6_row12_col1 {\n", " text-align: left;\n", "}\n", "</style>\n", "<table id=\"T_25dd6\" style=\"font-size: 14px\">\n", " <thead>\n", " <tr>\n", " <th id=\"T_25dd6_level0_col0\" class=\"col_heading level0 col0\" >Series Descriptor</th>\n", " <th id=\"T_25dd6_level0_col1\" class=\"col_heading level0 col1\" >Series-specific Information</th>\n", " </tr>\n", " </thead>\n", " <tbody>\n", " <tr>\n", " <td id=\"T_25dd6_row0_col0\" class=\"data row0 col0\" >Citation (APA)</td>\n", " <td id=\"T_25dd6_row0_col1\" class=\"data row0 col1\" >University College London, UCL Social Research Institute, Centre for Longitudinal Studies. (2021). <i>1970 British Cohort Study (BCS70).</i> UK Longitudinal Linkage Collaboration (UK LLC). <a href=\"https://doi.org/10.71760/ukllc-series-00003\" rel=\"noopener noreferrer\" target=\"_blank\">https://doi.org/10.71760/ukllc-series-00003</a></td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row1_col0\" class=\"data row1 col0\" >Download Citation</td>\n", " <td id=\"T_25dd6_row1_col1\" class=\"data row1 col1\" > <a href=\"https://api.datacite.org/application/vnd.citationstyles.csl+json/10.71760/ukllc-series-00003\" rel=\"noopener noreferrer\" target=\"_blank\">Citeproc JSON</a> <a href=\"https://api.datacite.org/application/x-bibtex/10.71760/ukllc-series-00003\" rel=\"noopener noreferrer\" target=\"_blank\">BibTeX</a> <a href=\"https://api.datacite.org/application/x-research-info-systems/10.71760/ukllc-series-00003\" rel=\"noopener noreferrer\" target=\"_blank\">RIS</a></td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row2_col0\" class=\"data row2 col0\" >Owner</td>\n", " <td id=\"T_25dd6_row2_col1\" class=\"data row2 col1\" >UCL</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row3_col0\" class=\"data row3 col0\" >Cohort</td>\n", " <td id=\"T_25dd6_row3_col1\" class=\"data row3 col1\" >17,198 births</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row4_col0\" class=\"data row4 col0\" >Age at Recruitment</td>\n", " <td id=\"T_25dd6_row4_col1\" class=\"data row4 col1\" >Birth</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row5_col0\" class=\"data row5 col0\" >Geographical Coverage - Nations</td>\n", " <td id=\"T_25dd6_row5_col1\" class=\"data row5 col1\" >England, Scotland, Wales</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row6_col0\" class=\"data row6 col0\" >Geographical Coverage - Regions</td>\n", " <td id=\"T_25dd6_row6_col1\" class=\"data row6 col1\" >Nationwide</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row7_col0\" class=\"data row7 col0\" >Start Date</td>\n", " <td id=\"T_25dd6_row7_col1\" class=\"data row7 col1\" >1970</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row8_col0\" class=\"data row8 col0\" >Permitted Linkages</td>\n", " <td id=\"T_25dd6_row8_col1\" class=\"data row8 col1\" >See <a href=\"https://guidebook.ukllc.ac.uk/docs/lps/linkages/lps_linkages\" rel=\"noopener noreferrer\" target=\"_blank\">here</a></td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row9_col0\" class=\"data row9 col0\" >Inclusion in Linkages</td>\n", " <td id=\"T_25dd6_row9_col1\" class=\"data row9 col1\" >Consent</td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row10_col0\" class=\"data row10 col0\" >Cohort Profile</td>\n", " <td id=\"T_25dd6_row10_col1\" class=\"data row10 col1\" > <a href=\"https://doi.org/10.1093/ije/dyac148\" rel=\"noopener noreferrer\" target=\"_blank\">10.1093/ije/dyac148</a></td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row11_col0\" class=\"data row11 col0\" >LPS Homepage</td>\n", " <td id=\"T_25dd6_row11_col1\" class=\"data row11 col1\" ><p><a href=\"https://cls.ucl.ac.uk/cls-studies/1970-british-cohort-study/\">cls.ucl.ac.uk</a></p></td>\n", " </tr>\n", " <tr>\n", " <td id=\"T_25dd6_row12_col0\" class=\"data row12 col0\" >Build a Data Request</td>\n", " <td id=\"T_25dd6_row12_col1\" class=\"data row12 col1\" > <a href=\"https://explore.ukllc.ac.uk/\" rel=\"noopener noreferrer\" target=\"_blank\">https://explore.ukllc.ac.uk/</a></td>\n", " </tr>\n", " </tbody>\n", "</table>\n" ], "text/plain": [ "<pandas.io.formats.style.Styler at 0x268fcae0470>" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "ss.info_table()" ] }, { "cell_type": "markdown", "id": "f62ebbde", "metadata": {}, "source": [ "## 2. Linkage Rates" ] }, { "cell_type": "code", "execution_count": 4, "id": "f1bec973", "metadata": { "execution": { "iopub.execute_input": "2025-07-28T18:20:26.246104Z", "iopub.status.busy": "2025-07-28T18:20:26.245102Z", "iopub.status.idle": "2025-07-28T18:20:26.579877Z", "shell.execute_reply": "2025-07-28T18:20:26.578859Z" }, "tags": [ "remove-input" ] }, "outputs": [ { "data": { "application/javascript": [ "'use strict';\n", "(function(root) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " const force = true;\n", "\n", " if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n", " root._bokeh_onload_callbacks = [];\n", " root._bokeh_is_loading = undefined;\n", " }\n", "\n", "const JS_MIME_TYPE = 'application/javascript';\n", " const HTML_MIME_TYPE = 'text/html';\n", " const EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json';\n", " const CLASS_NAME = 'output_bokeh rendered_html';\n", "\n", " /**\n", " * Render data to the DOM node\n", " */\n", " function render(props, node) {\n", " const script = document.createElement(\"script\");\n", " node.appendChild(script);\n", " }\n", "\n", " /**\n", " * Handle when an output is cleared or removed\n", " */\n", " function handleClearOutput(event, handle) {\n", " function drop(id) {\n", " const view = Bokeh.index.get_by_id(id)\n", " if (view != null) {\n", " view.model.document.clear()\n", " Bokeh.index.delete(view)\n", " }\n", " }\n", "\n", " const cell = handle.cell;\n", "\n", " const id = cell.output_area._bokeh_element_id;\n", " const server_id = cell.output_area._bokeh_server_id;\n", "\n", " // Clean up Bokeh references\n", " if (id != null) {\n", " drop(id)\n", " }\n", "\n", " if (server_id !== undefined) {\n", " // Clean up Bokeh references\n", " const cmd_clean = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n", " cell.notebook.kernel.execute(cmd_clean, {\n", " iopub: {\n", " output: function(msg) {\n", " const id = msg.content.text.trim()\n", " drop(id)\n", " }\n", " }\n", " });\n", " // Destroy server and session\n", " const cmd_destroy = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n", " cell.notebook.kernel.execute(cmd_destroy);\n", " }\n", " }\n", "\n", " /**\n", " * Handle when a new output is added\n", " */\n", " function handleAddOutput(event, handle) {\n", " const output_area = handle.output_area;\n", " const output = handle.output;\n", "\n", " // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n", " if ((output.output_type != \"display_data\") || (!Object.prototype.hasOwnProperty.call(output.data, EXEC_MIME_TYPE))) {\n", " return\n", " }\n", "\n", " const toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n", "\n", " if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n", " toinsert[toinsert.length - 1].firstChild.textContent = output.data[JS_MIME_TYPE];\n", " // store reference to embed id on output_area\n", " output_area._bokeh_element_id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n", " }\n", " if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n", " const bk_div = document.createElement(\"div\");\n", " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n", " const script_attrs = bk_div.children[0].attributes;\n", " for (let i = 0; i < script_attrs.length; i++) {\n", " toinsert[toinsert.length - 1].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n", " toinsert[toinsert.length - 1].firstChild.textContent = bk_div.children[0].textContent\n", " }\n", " // store reference to server id on output_area\n", " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n", " }\n", " }\n", "\n", " function register_renderer(events, OutputArea) {\n", "\n", " function append_mime(data, metadata, element) {\n", " // create a DOM node to render to\n", " const toinsert = this.create_output_subarea(\n", " metadata,\n", " CLASS_NAME,\n", " EXEC_MIME_TYPE\n", " );\n", " this.keyboard_manager.register_events(toinsert);\n", " // Render to node\n", " const props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n", " render(props, toinsert[toinsert.length - 1]);\n", " element.append(toinsert);\n", " return toinsert\n", " }\n", "\n", " /* Handle when an output is cleared or removed */\n", " events.on('clear_output.CodeCell', handleClearOutput);\n", " events.on('delete.Cell', handleClearOutput);\n", "\n", " /* Handle when a new output is added */\n", " events.on('output_added.OutputArea', handleAddOutput);\n", "\n", " /**\n", " * Register the mime type and append_mime function with output_area\n", " */\n", " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n", " /* Is output safe? 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If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"</p>\\n\"+\n \"<ul>\\n\"+\n \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n \"<li>use INLINE resources instead, as so:</li>\\n\"+\n \"</ul>\\n\"+\n \"<code>\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"</code>\\n\"+\n \"</div>\"}};\n\n function display_loaded(error = null) {\n const el = document.getElementById(null);\n if (el != null) {\n const html = (() => {\n if (typeof root.Bokeh === \"undefined\") {\n if (error == null) {\n return \"BokehJS is loading ...\";\n } else {\n return \"BokehJS failed to load.\";\n }\n } else {\n const prefix = `BokehJS ${root.Bokeh.version}`;\n if (error == null) {\n return `${prefix} successfully loaded.`;\n } else {\n return `${prefix} <b>encountered errors</b> while loading and may not function as expected.`;\n }\n }\n })();\n el.innerHTML = html;\n\n if (error != null) {\n const wrapper = document.createElement(\"div\");\n 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" const render_items = [{\"docid\":\"55c09493-a5ae-442b-8342-f6b2def21111\",\"roots\":{\"p1001\":\"b97f6b0a-150b-479b-9151-465a4f6ecec2\"},\"root_ids\":[\"p1001\"]}];\n", " void root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n", " }\n", " if (root.Bokeh !== undefined) {\n", " embed_document(root);\n", " } else {\n", " let attempts = 0;\n", " const timer = setInterval(function(root) {\n", " if (root.Bokeh !== undefined) {\n", " clearInterval(timer);\n", " embed_document(root);\n", " } else {\n", " attempts++;\n", " if (attempts > 100) {\n", " clearInterval(timer);\n", " console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n", " }\n", " }\n", " }, 10, root)\n", " }\n", "})(window);" ], "application/vnd.bokehjs_exec.v0+json": "" }, "metadata": { "application/vnd.bokehjs_exec.v0+json": { "id": "p1001" } }, "output_type": "display_data" } ], "source": [ "ss.linkages_plot()" ] }, { "cell_type": "markdown", "id": "919eb9a8", "metadata": {}, "source": [ "## 3. Documentation" ] }, { "cell_type": "code", "execution_count": 5, "id": "03bb886c", "metadata": { "execution": { "iopub.execute_input": "2025-07-28T18:20:26.588881Z", "iopub.status.busy": "2025-07-28T18:20:26.588881Z", "iopub.status.idle": "2025-07-28T18:20:26.602023Z", "shell.execute_reply": "2025-07-28T18:20:26.600006Z" }, "tags": [ "remove-input" ] }, "outputs": [ { "data": { "text/markdown": [ "We are currently building a documentation storage system which will host useful documents related to datasets and data owners. We will surface these documents on Guidebook." ], "text/plain": [ "<IPython.core.display.Markdown object>" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "ss.documentation()" ] } ], "metadata": { "kernelspec": { "display_name": "jupbook", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.12.7" } }, "nbformat": 4, "nbformat_minor": 5 }